Add CLAUDE.md and LaTeX paper, remove old papers directory

- Add CLAUDE.md with project guidance for Claude Code
- Add LaTeX/ with paper and figure generation scripts
- Remove papers/ directory (replaced by LaTeX/)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

LaTeX/generate_all_figures.py

@@ -0,0 +1,88 @@
+"""
+Master script to generate all figures for the paper
+Run this to create all PDF and PNG figures at once
+"""
+
+import subprocess
+import sys
+import os
+
+# Change to LaTeX directory
+script_dir = os.path.dirname(os.path.abspath(__file__))
+os.chdir(script_dir)
+
+scripts = [
+    'generate_slipnet_graph.py',
+    'compare_formulas.py',
+    'activation_spreading.py',
+    'resistance_distance.py',
+    'clustering_analysis.py',
+    'workspace_evolution.py',
+]
+
+print("="*70)
+print("Generating all figures for the paper:")
+print("  'From Hardcoded Heuristics to Graph-Theoretical Constructs'")
+print("="*70)
+print()
+
+failed_scripts = []
+
+for i, script in enumerate(scripts, 1):
+    print(f"[{i}/{len(scripts)}] Running {script}...")
+    try:
+        result = subprocess.run([sys.executable, script],
+                              capture_output=True,
+                              text=True,
+                              timeout=60)
+        if result.returncode == 0:
+            print(f"    ✓ Success")
+            if result.stdout:
+                print(f"    {result.stdout.strip()}")
+        else:
+            print(f"    ✗ Failed with return code {result.returncode}")
+            if result.stderr:
+                print(f"    Error: {result.stderr.strip()}")
+            failed_scripts.append(script)
+    except subprocess.TimeoutExpired:
+        print(f"    ✗ Timeout (>60s)")
+        failed_scripts.append(script)
+    except Exception as e:
+        print(f"    ✗ Exception: {e}")
+        failed_scripts.append(script)
+    print()
+
+print("="*70)
+print("Summary:")
+print("="*70)
+
+if not failed_scripts:
+    print("✓ All figures generated successfully!")
+    print()
+    print("Generated files:")
+    print("  - figure1_slipnet_graph.pdf/.png")
+    print("  - figure2_activation_spreading.pdf/.png")
+    print("  - figure3_resistance_distance.pdf/.png")
+    print("  - figure4_workspace_evolution.pdf/.png")
+    print("  - figure5_betweenness_dynamics.pdf/.png")
+    print("  - figure6_clustering_distribution.pdf/.png")
+    print("  - formula_comparison.pdf/.png")
+    print("  - scalability_comparison.pdf/.png")
+    print("  - slippability_temperature.pdf/.png")
+    print("  - external_strength_comparison.pdf/.png")
+    print()
+    print("You can now compile the LaTeX document with these figures.")
+    print("To include them in paper.tex, replace the placeholder \\fbox commands")
+    print("with \\includegraphics commands:")
+    print()
+    print("  \\includegraphics[width=0.8\\textwidth]{figure1_slipnet_graph.pdf}")
+else:
+    print(f"✗ {len(failed_scripts)} script(s) failed:")
+    for script in failed_scripts:
+        print(f"  - {script}")
+    print()
+    print("Please check the error messages above and ensure you have")
+    print("the required packages installed:")
+    print("  pip install matplotlib numpy networkx scipy")
+
+print("="*70)